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factorforge_cds_compare

agentby Eijex
FactorForgeBiotechDNA

Runs multiple public FactorForge CDS design profiles on the same protein sequence in a single call. Returns a comparison table with CAI, GC%, and composite score for each profile. Useful for reviewing metric trade-offs before selecting a candidate design.

Key Features

1.

Side-by-side profile comparison

2.

CAI, GC%, composite score per profile

3.

Single API call for multiple profiles

Use Cases

  1. 1.Reviewing public profile trade-offs before final CDS design
  2. 2.Comparing trade-offs between CAI and GC%

Parameters

NameTypeRequiredDescription
sequencestringrequiredAmino acid sequence (single-letter code)
profilesstringoptionalComma-separated profiles (default: balanced,high_cai,gc_target)

Connection

.mcp.json / MCP client settingsJSON
{
  "mcpServers": {
    "eijex": {
      "type": "http",
      "url": "https://mcp.eijex.com/api/mcp"
    }
  }
}

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